HL_1K9M_014

3D structure

PDB id

1K9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of tylosin bound to the 50S ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGCAUCGAC

Length

9 nucleotides

Bulged bases

1K9M|1|A|G|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1K9M_014 not in the Motif Atlas

Homologous match to HL_4V9F_014

Geometric discrepancy: 0.0468

The information below is about HL_4V9F_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

1K9M|1|A|G|416
1K9M|1|A|G|417
1K9M|1|A|C|418
1K9M|1|A|A|419
1K9M|1|A|U|420
1K9M|1|A|C|421
1K9M|1|A|G|422
1K9M|1|A|A|423
1K9M|1|A|C|424

Current chains

Chain A

23S RRNA

Nearby chains

Chain 4

RIBOSOMAL PROTEIN L44E

Chain M

RIBOSOMAL PROTEIN L15

Chain N

RIBOSOMAL PROTEIN L15E