HL_1KC8_002

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

CGCACGGAG

Length

9 nucleotides

Bulged bases

1KC8|1|A|C|87

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KC8_002 not in the Motif Atlas

Homologous match to HL_4V9F_002

Geometric discrepancy: 0.0547

The information below is about HL_4V9F_002

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

1KC8|1|A|C|83
1KC8|1|A|G|84
1KC8|1|A|C|85
1KC8|1|A|A|86
1KC8|1|A|C|87
1KC8|1|A|G|88
1KC8|1|A|G|89
1KC8|1|A|A|90
1KC8|1|A|G|91

Current chains

Chain A

23S RRNA

Nearby chains

Chain 3

RIBOSOMAL PROTEIN L39E

Chain U

RIBOSOMAL PROTEIN L24

Chain W

RIBOSOMAL PROTEIN L29