HL_1KC8_014
3D structure
- PDB id
- 1KC8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.01 Å
Loop
- Sequence
- GGCAUCGAC
- Length
- 9 nucleotides
- Bulged bases
- 1KC8|1|A|G|417
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1KC8_014 not in the Motif Atlas
- Homologous match to HL_4V9F_014
- Geometric discrepancy: 0.0413
- The information below is about HL_4V9F_014
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
1KC8|1|A|G|416
1KC8|1|A|G|417
1KC8|1|A|C|418
1KC8|1|A|A|419
1KC8|1|A|U|420
1KC8|1|A|C|421
1KC8|1|A|G|422
1KC8|1|A|A|423
1KC8|1|A|C|424
Current chains
- Chain A
- 23S RRNA
Nearby chains
- Chain 4
- RIBOSOMAL PROTEIN L44E
- Chain M
- RIBOSOMAL PROTEIN L15
- Chain N
- RIBOSOMAL PROTEIN L15E
Coloring options: