HL_1KC8_019

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GAGUAUC

Length

7 nucleotides

Bulged bases

1KC8|1|A|G|672, 1KC8|1|A|A|674

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KC8_019 not in the Motif Atlas

Homologous match to HL_4V9F_019

Geometric discrepancy: 0.047

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41169.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

4

Unit IDs

1KC8|1|A|G|670
1KC8|1|A|A|671
1KC8|1|A|G|672
1KC8|1|A|U|673
1KC8|1|A|A|674
1KC8|1|A|U|675
1KC8|1|A|C|676

Current chains

Chain A

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L4