HL_1KC8_052

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

GUGCGGAGUC

Length

10 nucleotides

Bulged bases

1KC8|1|A|C|2071, 1KC8|1|A|G|2072, 1KC8|1|A|G|2073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KC8_052 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.0442

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

1KC8|1|A|G|2068
1KC8|1|A|U|2069
1KC8|1|A|G|2070
1KC8|1|A|C|2071
1KC8|1|A|G|2072
1KC8|1|A|G|2073
1KC8|1|A|A|2074
1KC8|1|A|G|2075
1KC8|1|A|U|2076
1KC8|1|A|C|2077

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain Z

RIBOSOMAL PROTEIN L32E