HL_1KC8_058

3D structure

PDB id

1KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Blasticidin S Bound to the 50S Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.01 Å

Loop

Sequence

UGCAAGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KC8_058 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.0406

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

1KC8|1|A|U|2358
1KC8|1|A|G|2359
1KC8|1|A|C|2360
1KC8|1|A|A|2361
1KC8|1|A|A|2362
1KC8|1|A|G|2363
1KC8|1|A|A|2364
1KC8|1|A|G|2365

Current chains

Chain A

23S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN L10E

Chain O

RIBOSOMAL PROTEIN L18

Chain R

RIBOSOMAL PROTEIN L21E