HL_1KD1_033

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KD1_033 not in the Motif Atlas

Homologous match to HL_4V9F_033

Geometric discrepancy: 0.0439

The information below is about HL_4V9F_033

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

1KD1|1|A|U|1326
1KD1|1|A|G|1327
1KD1|1|A|A|1328
1KD1|1|A|A|1329
1KD1|1|A|A|1330
1KD1|1|A|A|1331

Current chains

Chain A

23S RRNA

Nearby chains

Chain Z

RIBOSOMAL PROTEIN L32E