HL_1KD1_042

3D structure

PDB id

1KD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal Structure of Spiramycin bound to the 50S Ribosomal Subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1KD1|1|A|A|1689, 1KD1|1|A|A|1691, 1KD1|1|A|A|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KD1_042 not in the Motif Atlas

Homologous match to HL_4V9F_042

Geometric discrepancy: 0.04

The information below is about HL_4V9F_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1KD1|1|A|C|1687
1KD1|1|A|G|1688
1KD1|1|A|A|1689
1KD1|1|A|C|1690
1KD1|1|A|A|1691
1KD1|1|A|C|1692
1KD1|1|A|A|1693
1KD1|1|A|G|1694

Current chains

Chain A

23S RRNA

Nearby chains

Chain 2

RIBOSOMAL PROTEIN L37E

Chain 3

RIBOSOMAL PROTEIN L39E

Chain S

RIBOSOMAL PROTEIN L22