HL_1KQS_007

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCAAUG

Length

7 nucleotides

Bulged bases

1KQS|1|0|C|197, 1KQS|1|0|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_007 not in the Motif Atlas

Homologous match to HL_4V9F_007

Geometric discrepancy: 0.0338

The information below is about HL_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81964.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

1KQS|1|0|C|195
1KQS|1|0|G|196
1KQS|1|0|C|197
1KQS|1|0|A|198
1KQS|1|0|A|199
1KQS|1|0|U|200
1KQS|1|0|G|201

Current chains

Chain 0

23S RRNA

Nearby chains

Chain K

RIBOSOMAL PROTEIN L15

Chain L

RIBOSOMAL PROTEIN L15E