HL_1KQS_036

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAACUC

Length

7 nucleotides

Bulged bases

1KQS|1|0|U|1473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_036 not in the Motif Atlas

Homologous match to HL_4V9F_036

Geometric discrepancy: 0.0591

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

1KQS|1|0|G|1468
1KQS|1|0|C|1469
1KQS|1|0|A|1470
1KQS|1|0|A|1471
1KQS|1|0|C|1472
1KQS|1|0|U|1473
1KQS|1|0|C|1474

Current chains

Chain 0

23S RRNA

Nearby chains

Chain L

RIBOSOMAL PROTEIN L15E

Chain Z

RIBOSOMAL PROTEIN L37E