HL_1KQS_056

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

1KQS|1|0|A|2302, 1KQS|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0299

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

1KQS|1|0|C|2298
1KQS|1|0|G|2299
1KQS|1|0|A|2300
1KQS|1|0|A|2301
1KQS|1|0|A|2302
1KQS|1|0|A|2303
1KQS|1|0|G|2304
1KQS|1|0|A|2305
1KQS|1|0|U|2306
1KQS|1|0|A|2307
1KQS|1|0|U|2308
1KQS|1|0|C|2309
1KQS|1|0|G|2310

Current chains

Chain 0

23S RRNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

RIBOSOMAL PROTEIN L10E

Chain P

RIBOSOMAL PROTEIN L21E