HL_1KQS_066

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_066 not in the Motif Atlas

Geometric match to HL_4V9F_066

Geometric discrepancy: 0.0366

The information below is about HL_4V9F_066

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

1KQS|1|0|C|2695
1KQS|1|0|G|2696
1KQS|1|0|A|2697
1KQS|1|0|G|2698
1KQS|1|0|A|2699
1KQS|1|0|G|2700

Current chains

Chain 0

23S RRNA

Nearby chains

Chain E

RIBOSOMAL PROTEIN L6