HL_1KQS_075

3D structure

PDB id

1KQS (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Haloarcula marismortui 50S Complexed with a Pretranslocational Intermediate in Protein Synthesis

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UACCCAUCCCGAACA

Length

15 nucleotides

Bulged bases

1KQS|1|9|C|3040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1KQS_075 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.0532

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

1KQS|1|9|U|3033
1KQS|1|9|A|3034
1KQS|1|9|C|3035
1KQS|1|9|C|3036
1KQS|1|9|C|3037
1KQS|1|9|A|3038
1KQS|1|9|U|3039
1KQS|1|9|C|3040
1KQS|1|9|C|3041
1KQS|1|9|C|3042
1KQS|1|9|G|3043
1KQS|1|9|A|3044
1KQS|1|9|A|3045
1KQS|1|9|C|3046
1KQS|1|9|A|3047

Current chains

Chain 9

5S RRNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

RIBOSOMAL PROTEIN L5

Chain M

RIBOSOMAL PROTEIN L18