3D structure

PDB id
1L1W (explore in PDB, NAKB, or RNA 3D Hub)
Description
NMR structure of a SRP19 binding domain in human SRP RNA
Experimental method
SOLUTION NMR
Resolution

Loop

Sequence
GGGAGC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1L1W_001 not in the Motif Atlas
Geometric match to HL_3IGI_004
Geometric discrepancy: 0.2301
The information below is about HL_3IGI_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_04783.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
9

Unit IDs

1L1W|1|A|G|12
1L1W|1|A|G|13
1L1W|1|A|G|14
1L1W|1|A|A|15
1L1W|1|A|G|16
1L1W|1|A|C|17

Current chains

Chain A
SRP19 binding domain of SRP RNA

Nearby chains

No other chains within 10Å

Coloring options:


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