HL_1LUU_004

3D structure

PDB id

1LUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR SOLUTION STRUCTURE OF THE ANTICODON OF YEAST TRNA-PHE WITH 4 MODIFICATIONS (OMC32 OMG34 1MG37 5MC40)

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

A(OMC)U(OMG)AA(1MG)AU

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, OMG, 1MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1LUU_004 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1533

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1LUU|4|A|A|31
1LUU|4|A|OMC|32
1LUU|4|A|U|33
1LUU|4|A|OMG|34
1LUU|4|A|A|35
1LUU|4|A|A|36
1LUU|4|A|1MG|37
1LUU|4|A|A|38
1LUU|4|A|U|39

Current chains

Chain A

5'-R(*CP*CP*AP*GP*AP*(OMC)P*UP*(OMG)P*AP*AP*(1MG)P*AP*UP*(5MC)P*UP*GP*G)-3'

Nearby chains