3D structure

PDB id
1M1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Co-crystal structure of azithromycin bound to the 50S ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UGUGAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1M1K_015 not in the Motif Atlas
Homologous match to HL_4V9F_015
Geometric discrepancy: 0.0512
The information below is about HL_4V9F_015
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

1M1K|1|A|U|468
1M1K|1|A|G|469
1M1K|1|A|U|470
1M1K|1|A|G|471
1M1K|1|A|A|472
1M1K|1|A|A|473

Current chains

Chain A
23S RRNA

Nearby chains

Chain 2
RIBOSOMAL PROTEIN L37E
Chain 3
RIBOSOMAL PROTEIN L39E
Chain E
RIBOSOMAL PROTEIN L4
Chain S
RIBOSOMAL PROTEIN L22

Coloring options:


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