HL_1M5P_004

3D structure

PDB id

1M5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Transition State Stabilization by a Catalytic RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M5P_004 not in the Motif Atlas

Geometric match to HL_5TBW_033

Geometric discrepancy: 0.3497

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

1M5P|1|E|G|74
1M5P|1|E|G|75
1M5P|1|E|A|76
1M5P|1|E|A|77
1M5P|1|E|A|78
1M5P|1|E|C|79

Current chains

Chain E

RNA HAIRPIN RIBOZYME

Nearby chains