HL_1M5V_003

3D structure

PDB id

1M5V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Transition State Stabilization by a Catalytic RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

1M5V|1|E|C|40, 1M5V|1|E|U|43

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M5V_003 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1202

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

1M5V|1|E|C|35
1M5V|1|E|A|36
1M5V|1|E|U|37
1M5V|1|E|U|38
1M5V|1|E|G|39
1M5V|1|E|C|40
1M5V|1|E|A|41
1M5V|1|E|C|42
1M5V|1|E|U|43
1M5V|1|E|C|44
1M5V|1|E|C|45
1M5V|1|E|G|46

Current chains

Chain E

RNA HAIRPIN RIBOZYME

Nearby chains

Chain F

U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A