HL_1M90_029

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M90_029 not in the Motif Atlas

Homologous match to HL_4V9F_029

Geometric discrepancy: 0.0353

The information below is about HL_4V9F_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1M90|1|A|G|1076
1M90|1|A|G|1077
1M90|1|A|A|1078
1M90|1|A|A|1079
1M90|1|A|C|1080
1M90|1|A|A|1081
1M90|1|A|A|1082
1M90|1|A|C|1083

Current chains

Chain A

23S RRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain X

RIBOSOMAL PROTEIN L30

Chain Z

RIBOSOMAL PROTEIN L32E