HL_1M90_052

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGCGGAGUC

Length

10 nucleotides

Bulged bases

1M90|1|A|C|2071, 1M90|1|A|G|2072, 1M90|1|A|G|2073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M90_052 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.0276

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

1M90|1|A|G|2068
1M90|1|A|U|2069
1M90|1|A|G|2070
1M90|1|A|C|2071
1M90|1|A|G|2072
1M90|1|A|G|2073
1M90|1|A|A|2074
1M90|1|A|G|2075
1M90|1|A|U|2076
1M90|1|A|C|2077

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain Z

RIBOSOMAL PROTEIN L32E