HL_1M90_061

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCUUGAUGC

Length

9 nucleotides

Bulged bases

1M90|1|A|C|2443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M90_061 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.0318

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

1M90|1|A|G|2442
1M90|1|A|C|2443
1M90|1|A|U|2444
1M90|1|A|U|2445
1M90|1|A|G|2446
1M90|1|A|A|2447
1M90|1|A|U|2448
1M90|1|A|G|2449
1M90|1|A|C|2450

Current chains

Chain A

23S RRNA

Nearby chains

Chain 4

RIBOSOMAL PROTEIN L44E

Chain M

RIBOSOMAL PROTEIN L15

Chain N

RIBOSOMAL PROTEIN L15E