HL_1M90_069

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUACAAGAC

Length

9 nucleotides

Bulged bases

1M90|1|A|U|2837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M90_069 not in the Motif Atlas

Homologous match to HL_4V9F_069

Geometric discrepancy: 0.026

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1M90|1|A|G|2836
1M90|1|A|U|2837
1M90|1|A|A|2838
1M90|1|A|C|2839
1M90|1|A|A|2840
1M90|1|A|A|2841
1M90|1|A|G|2842
1M90|1|A|A|2843
1M90|1|A|C|2844

Current chains

Chain A

23S RRNA

Nearby chains

Chain D

RIBOSOMAL PROTEIN L3

Chain S

RIBOSOMAL PROTEIN L22

Chain Y

RIBOSOMAL PROTEIN L31E