HL_1M90_071

3D structure

PDB id

1M90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of CCA-Phe-caproic acid-biotin and sparsomycin bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

1M90|1|B|C|3040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1M90_071 not in the Motif Atlas

Homologous match to HL_4V9F_071

Geometric discrepancy: 0.0956

The information below is about HL_4V9F_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47787.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1M90|1|B|C|3037
1M90|1|B|A|3038
1M90|1|B|U|3039
1M90|1|B|C|3040
1M90|1|B|C|3041
1M90|1|B|C|3042
1M90|1|B|G|3043

Current chains

Chain B

5S RRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

RIBOSOMAL PROTEIN L5

Chain O

RIBOSOMAL PROTEIN L18