HL_1MJ1_003

3D structure

PDB id

1MJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FITTING THE TERNARY COMPLEX OF EF-Tu/tRNA/GTP AND RIBOSOMAL PROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

G(5MU)(PSU)CG(1MA)UCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1MJ1_003 not in the Motif Atlas

Homologous match to HL_6CFJ_108

Geometric discrepancy: 0.1369

The information below is about HL_6CFJ_108

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

1MJ1|1|D|G|53
1MJ1|1|D|5MU|54
1MJ1|1|D|PSU|55
1MJ1|1|D|C|56
1MJ1|1|D|G|57
1MJ1|1|D|1MA|58
1MJ1|1|D|U|59
1MJ1|1|D|C|60
1MJ1|1|D|C|61

Current chains

Chain D

Phe-tRNA

Nearby chains

Chain A

Elongation Factor Tu

Chain L

L11 ribosomal protein