HL_1MSY_002

3D structure

PDB id

1MSY (explore in PDB, NAKB, or RNA 3D Hub)

Description

GUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNA

Experimental method

X-RAY DIFFRACTION

Resolution

1.41 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1MSY_002 not in the Motif Atlas

Geometric match to HL_8B0X_018

Geometric discrepancy: 0.1578

The information below is about HL_8B0X_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

1MSY|1|A|C|2658
1MSY|1|A|G|2659
1MSY|1|A|U|2660
1MSY|1|A|A|2661
1MSY|1|A|A|2662
1MSY|1|A|G|2663||A

Current chains

Chain A

SARCIN/RICIN DOMAIN FROM 23 S RRNA

Nearby chains