HL_1N33_013

3D structure

PDB id

1N33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N33_013 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2904

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

1N33|1|A|C|522
1N33|1|A|A|523
1N33|1|A|G|524
1N33|1|A|C|525
1N33|1|A|C|526
1N33|1|A|G|527

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain L

30S RIBOSOMAL PROTEIN S12

Chain Z

A-SITE MESSENGER RNA FRAGMENT