HL_1N33_030
3D structure
- PDB id
- 1N33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GAUCAGCCAUGC
- Length
- 12 nucleotides
- Bulged bases
- 1N33|1|A|U|1364
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1N33_030 not in the Motif Atlas
- Homologous match to HL_4LFB_030
- Geometric discrepancy: 0.1188
- The information below is about HL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
1N33|1|A|G|1356
1N33|1|A|A|1357
1N33|1|A|U|1358
1N33|1|A|C|1359
1N33|1|A|A|1360
1N33|1|A|G|1361
1N33|1|A|C|1361|||A
1N33|1|A|C|1362
1N33|1|A|A|1363
1N33|1|A|U|1364
1N33|1|A|G|1365
1N33|1|A|C|1366
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain N
- 30S RIBOSOMAL PROTEIN S14
- Chain V
- 30S RIBOSOMAL PROTEIN THX
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