HL_1N34_002

3D structure

PDB id

1N34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGUUUUACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N34_002 not in the Motif Atlas

Geometric match to HL_3WFS_002

Geometric discrepancy: 0.3555

The information below is about HL_3WFS_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

1N34|1|A|G|79
1N34|1|A|G|80
1N34|1|A|U|81
1N34|1|A|U|82
1N34|1|A|U|83
1N34|1|A|U|84
1N34|1|A|A|88
1N34|1|A|C|89
1N34|1|A|U|90

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains