HL_1N34_005

3D structure

PDB id

1N34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GGCUUUGCC

Length

9 nucleotides

Bulged bases

1N34|1|A|U|202, 1N34|1|A|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N34_005 not in the Motif Atlas

Geometric match to HL_5XUZ_001

Geometric discrepancy: 0.1999

The information below is about HL_5XUZ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

1N34|1|A|G|199
1N34|1|A|G|200
1N34|1|A|C|201
1N34|1|A|U|202
1N34|1|A|U|203
1N34|1|A|U|204
1N34|1|A|G|216
1N34|1|A|C|217
1N34|1|A|C|218

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains