HL_1N34_016

3D structure

PDB id

1N34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of codon and crystallographically disordered near-cognate transfer rna anticodon stem-loop mismatched at the first codon position

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N34_016 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.1065

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

1N34|1|A|C|726
1N34|1|A|G|727
1N34|1|A|A|728
1N34|1|A|A|729
1N34|1|A|G|730
1N34|1|A|G|731

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain O

30S RIBOSOMAL PROTEIN S15

Chain R

30S RIBOSOMAL PROTEIN S18