HL_1N77_006

3D structure

PDB id

1N77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Thermus thermophilus glutamyl-tRNA synthetase complexed with tRNA(Glu) and ATP.

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N77_006 not in the Motif Atlas

Geometric match to HL_1N78_003

Geometric discrepancy: 0.0867

The information below is about HL_1N78_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1N77|1|D|G|553
1N77|1|D|U|554
1N77|1|D|U|555
1N77|1|D|C|556
1N77|1|D|G|557
1N77|1|D|A|558
1N77|1|D|U|559
1N77|1|D|U|560
1N77|1|D|C|561

Current chains

Chain D

tRNA(Glu)

Nearby chains