HL_1N8R_007

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCAAUG

Length

7 nucleotides

Bulged bases

1N8R|1|A|C|197, 1N8R|1|A|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N8R_007 not in the Motif Atlas

Homologous match to HL_4V9F_007

Geometric discrepancy: 0.0644

The information below is about HL_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36488.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

1N8R|1|A|C|195
1N8R|1|A|G|196
1N8R|1|A|C|197
1N8R|1|A|A|198
1N8R|1|A|A|199
1N8R|1|A|U|200
1N8R|1|A|G|201

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15P

Chain N

50S ribosomal protein L15E