HL_1N8R_037
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUUAAUAUUC
- Length
- 10 nucleotides
- Bulged bases
- 1N8R|1|A|U|1505, 1N8R|1|A|U|1506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1N8R_037 not in the Motif Atlas
- Homologous match to HL_4V9F_037
- Geometric discrepancy: 0.0369
- The information below is about HL_4V9F_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77449.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
1N8R|1|A|G|1498
1N8R|1|A|U|1499
1N8R|1|A|U|1500
1N8R|1|A|A|1501
1N8R|1|A|A|1502
1N8R|1|A|U|1503
1N8R|1|A|A|1504
1N8R|1|A|U|1505
1N8R|1|A|U|1506
1N8R|1|A|C|1507
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L19E
- Chain T
- 50S ribosomal protein L23P
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