HL_1N8R_052

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCGGAGUC

Length

10 nucleotides

Bulged bases

1N8R|1|A|C|2071, 1N8R|1|A|G|2072, 1N8R|1|A|G|2073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N8R_052 not in the Motif Atlas

Homologous match to HL_4V9F_052

Geometric discrepancy: 0.0492

The information below is about HL_4V9F_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

1N8R|1|A|G|2068
1N8R|1|A|U|2069
1N8R|1|A|G|2070
1N8R|1|A|C|2071
1N8R|1|A|G|2072
1N8R|1|A|G|2073
1N8R|1|A|A|2074
1N8R|1|A|G|2075
1N8R|1|A|U|2076
1N8R|1|A|C|2077

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3P

Chain Z

50S ribosomal protein L32E