HL_1N8R_055

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1N8R|1|A|G|2283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N8R_055 not in the Motif Atlas

Homologous match to HL_4V9F_055

Geometric discrepancy: 0.0475

The information below is about HL_4V9F_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

1N8R|1|A|C|2281
1N8R|1|A|U|2282
1N8R|1|A|G|2283
1N8R|1|A|G|2284
1N8R|1|A|G|2285
1N8R|1|A|G|2286
1N8R|1|A|C|2287
1N8R|1|A|G|2288
1N8R|1|A|G|2289

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L10e