HL_1N8R_069

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUACAAGAC

Length

9 nucleotides

Bulged bases

1N8R|1|A|U|2837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N8R_069 not in the Motif Atlas

Homologous match to HL_4V9F_069

Geometric discrepancy: 0.0533

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

1N8R|1|A|G|2836
1N8R|1|A|U|2837
1N8R|1|A|A|2838
1N8R|1|A|C|2839
1N8R|1|A|A|2840
1N8R|1|A|A|2841
1N8R|1|A|G|2842
1N8R|1|A|A|2843
1N8R|1|A|C|2844

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3P

Chain S

50S ribosomal protein L22P

Chain Y

50S ribosomal protein L31E