HL_1N8R_072

3D structure

PDB id

1N8R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of large ribosomal subunit in complex with virginiamycin M

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N8R_072 not in the Motif Atlas

Homologous match to HL_4V9F_072

Geometric discrepancy: 0.0365

The information below is about HL_4V9F_072

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

1N8R|1|B|C|3089
1N8R|1|B|G|3090
1N8R|1|B|C|3091
1N8R|1|B|G|3092
1N8R|1|B|A|3093
1N8R|1|B|G|3094

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain J

50S ribosomal protein L10e

Chain X

50S ribosomal protein L30P