HL_1N8R_075
3D structure
- PDB id
- 1N8R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of large ribosomal subunit in complex with virginiamycin M
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UACCCAUCCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 1N8R|1|B|C|3040
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1N8R_075 not in the Motif Atlas
- Homologous match to HL_4V9F_074
- Geometric discrepancy: 0.0573
- The information below is about HL_4V9F_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
1N8R|1|B|U|3033
1N8R|1|B|A|3034
1N8R|1|B|C|3035
1N8R|1|B|C|3036
1N8R|1|B|C|3037
1N8R|1|B|A|3038
1N8R|1|B|U|3039
1N8R|1|B|C|3040
1N8R|1|B|C|3041
1N8R|1|B|C|3042
1N8R|1|B|G|3043
1N8R|1|B|A|3044
1N8R|1|B|A|3045
1N8R|1|B|C|3046
1N8R|1|B|A|3047
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5P
- Chain O
- 50S ribosomal protein L18P
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