HL_1N8X_008

3D structure

PDB id

1N8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of HIV-1 Stem Loop SL1

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGAGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1N8X_008 not in the Motif Atlas

Geometric match to HL_7RQB_063

Geometric discrepancy: 0.1923

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

1N8X|8|A|G|15
1N8X|8|A|G|16
1N8X|8|A|A|17
1N8X|8|A|G|18
1N8X|8|A|A|19
1N8X|8|A|C|20

Current chains

Chain A

HIV-1 STEM LOOP SL1 MONOMERIC RNA

Nearby chains