HL_1NJI_014

3D structure

PDB id

1NJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of chloramphenicol bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGCAUCGAC

Length

9 nucleotides

Bulged bases

1NJI|1|A|G|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJI_014 not in the Motif Atlas

Homologous match to HL_4V9F_014

Geometric discrepancy: 0.0413

The information below is about HL_4V9F_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

1NJI|1|A|G|416
1NJI|1|A|G|417
1NJI|1|A|C|418
1NJI|1|A|A|419
1NJI|1|A|U|420
1NJI|1|A|C|421
1NJI|1|A|G|422
1NJI|1|A|A|423
1NJI|1|A|C|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L44E

Chain M

50S ribosomal protein L15P

Chain N

50S ribosomal protein L15E