HL_1NJI_036

3D structure

PDB id

1NJI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of chloramphenicol bound to the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAACUC

Length

7 nucleotides

Bulged bases

1NJI|1|A|U|1473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJI_036 not in the Motif Atlas

Homologous match to HL_4V9F_036

Geometric discrepancy: 0.0278

The information below is about HL_4V9F_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

1NJI|1|A|G|1468
1NJI|1|A|C|1469
1NJI|1|A|A|1470
1NJI|1|A|A|1471
1NJI|1|A|C|1472
1NJI|1|A|U|1473
1NJI|1|A|C|1474

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L37e

Chain N

50S ribosomal protein L15E