HL_1NJM_003

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

1NJM|1|0|A|123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_003 not in the Motif Atlas

Homologous match to HL_7RQB_003

Geometric discrepancy: 0.2094

The information below is about HL_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

1NJM|1|0|G|121
1NJM|1|0|G|122
1NJM|1|0|A|123
1NJM|1|0|A|124
1NJM|1|0|A|125
1NJM|1|0|C|126

Current chains

Chain 0

23S ribosomal RNA

Nearby chains