HL_1NJM_008

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_008 not in the Motif Atlas

Homologous match to HL_4WF9_008

Geometric discrepancy: 0.4168

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.3

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

15

Unit IDs

1NJM|1|0|C|223
1NJM|1|0|G|224
1NJM|1|0|G|225
1NJM|1|0|C|226
1NJM|1|0|G|227
1NJM|1|0|A|228
1NJM|1|0|G|229

Current chains

Chain 0

23S ribosomal RNA

Nearby chains