HL_1NJM_017

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1NJM|1|0|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_017 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.375

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1NJM|1|0|U|575
1NJM|1|0|A|576
1NJM|1|0|U|577
1NJM|1|0|U|578
1NJM|1|0|G|579
1NJM|1|0|A|580
1NJM|1|0|A|581
1NJM|1|0|G|582
1NJM|1|0|C|583
1NJM|1|0|A|584

Current chains

Chain 0

23S ribosomal RNA

Nearby chains