HL_1NJM_022

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGCUGAAACA

Length

10 nucleotides

Bulged bases

1NJM|1|0|U|760, 1NJM|1|0|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_022 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.5076

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

12

Unit IDs

1NJM|1|0|U|757
1NJM|1|0|G|758
1NJM|1|0|C|759
1NJM|1|0|U|760
1NJM|1|0|G|761
1NJM|1|0|A|762
1NJM|1|0|A|763
1NJM|1|0|A|764
1NJM|1|0|C|765
1NJM|1|0|A|766

Current chains

Chain 0

23S ribosomal RNA

Nearby chains