HL_1NJM_029

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_029 not in the Motif Atlas

Homologous match to HL_7A0S_029

Geometric discrepancy: 0.3218

The information below is about HL_7A0S_029

Detailed Annotation

GNRA related

Broad Annotation

T-loop

Motif group

HL_38635.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1NJM|1|0|C|1103
1NJM|1|0|G|1104
1NJM|1|0|U|1105
1NJM|1|0|A|1106
1NJM|1|0|A|1107
1NJM|1|0|U|1108
1NJM|1|0|A|1109
1NJM|1|0|G|1110

Current chains

Chain 0

23S ribosomal RNA

Nearby chains