HL_1NJM_051

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1NJM|1|0|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_051 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.2238

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

1NJM|1|0|C|2227
1NJM|1|0|U|2228
1NJM|1|0|G|2229
1NJM|1|0|G|2230
1NJM|1|0|G|2231
1NJM|1|0|G|2232
1NJM|1|0|C|2233
1NJM|1|0|G|2234
1NJM|1|0|G|2235

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16