HL_1NJM_052

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

1NJM|1|0|A|2247, 1NJM|1|0|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_052 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.2997

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

1NJM|1|0|C|2243
1NJM|1|0|C|2244
1NJM|1|0|A|2245
1NJM|1|0|A|2246
1NJM|1|0|A|2247
1NJM|1|0|A|2248
1NJM|1|0|U|2249
1NJM|1|0|G|2250
1NJM|1|0|U|2251
1NJM|1|0|A|2252
1NJM|1|0|A|2253
1NJM|1|0|C|2254
1NJM|1|0|G|2255

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16