HL_1NJM_055

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUGACACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_055 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.1926

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1NJM|1|0|C|2334
1NJM|1|0|U|2335
1NJM|1|0|G|2336
1NJM|1|0|A|2337
1NJM|1|0|C|2338
1NJM|1|0|A|2339
1NJM|1|0|C|2340
1NJM|1|0|G|2341

Current chains

Chain 0

23S ribosomal RNA

Nearby chains