HL_1NJM_057

3D structure

PDB id

1NJM (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

1NJM|1|0|U|2385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJM_057 not in the Motif Atlas

Homologous match to HL_4WF9_055

Geometric discrepancy: 0.1911

The information below is about HL_4WF9_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1NJM|1|0|C|2383
1NJM|1|0|G|2384
1NJM|1|0|U|2385
1NJM|1|0|G|2386
1NJM|1|0|U|2387
1NJM|1|0|G|2388
1NJM|1|0|G|2389
1NJM|1|0|A|2390
1NJM|1|0|A|2391
1NJM|1|0|G|2392

Current chains

Chain 0

23S ribosomal RNA

Nearby chains